|
Viral infection and transmission in a large well-traced outbreak caused by the Delta SARS-CoV-2 variant
|
|
0
|
299100
|
July 7, 2021
|
|
Further musings on the tMRCA
|
|
5
|
6816
|
January 27, 2020
|
|
Update to observations about putative APOBEC3 deaminase editing in the light of new genomes from USA
|
|
0
|
8578
|
June 5, 2022
|
|
The Sarbecovirus origin of SARS-CoV-2’s furin cleavage site
|
|
5
|
30439
|
November 23, 2021
|
|
Time dependence of SARS-CoV-2 substitution rates
|
|
3
|
6559
|
August 31, 2020
|
|
Transparent analysis of raw COVID-19 data: lack and low quality of raw data
|
|
2
|
7566
|
February 27, 2020
|
|
Putative host origins of RNA insertions in SARS-CoV-2 genomes
|
|
3
|
20598
|
December 6, 2021
|
|
Phylogenetic relationship of SARS-CoV-2 sequences from Amazonas with emerging Brazilian variants harboring mutations E484K and N501Y in the Spike protein
|
|
2
|
41962
|
February 27, 2021
|
|
SARS-CoV-2 reinfection by the new Variant of Concern (VOC) P.1 in Amazonas, Brazil
|
|
3
|
63825
|
January 19, 2021
|
|
Year-letter Genetic Clade Naming for SARS-CoV-2 on Nextstrain.org
|
|
1
|
15552
|
June 2, 2020
|
|
A fool’s errand: predicting the evolutionary future of the Omicron SARS-CoV-2 lineage
|
|
0
|
6755
|
December 10, 2021
|
|
nCoV-2019 codon usage and reservoir (not snakes v2)
|
|
3
|
31563
|
January 27, 2020
|
|
First report of COVID-19 in Scotland
|
|
1
|
13475
|
June 9, 2020
|
|
Epidemiological Data from the nCoV-2019 Outbreak: Early Descriptions from Publicly Available Data
|
|
2
|
33237
|
January 25, 2020
|
|
Clock and TMRCA based on 27 genomes
|
|
5
|
69368
|
January 28, 2020
|
|
Multiplexed RT-qPCR to screen for SARS-COV-2 B.1.1.7 variants: Preliminary results
|
|
1
|
11293
|
January 25, 2021
|
|
The emergence of the B.1.1.7 lineage in Jordan
|
|
0
|
5005
|
February 27, 2021
|
|
Monkeypox virus genome sequences from multiple lesions indicates co-infection of a UK returning traveller
|
|
1
|
11062
|
June 23, 2022
|
|
Number of mutations along a transmission chain
|
|
0
|
4800
|
January 31, 2020
|
|
Detection of non-B.1.1.7 Spike ∆69/70 sequences (B.1.375) in the United States
|
|
1
|
10472
|
January 14, 2021
|
|
Genomic epidemiology of early introductions of SARS-CoV-2 into the Canadian province of Québec
|
|
0
|
17092
|
September 18, 2020
|
|
Issue with pipelines using bcftools to calling consensus in low-coverage regions
|
|
1
|
6737
|
October 19, 2022
|
|
Naturally occurring indels in multiple coronavirus spikes
|
|
3
|
14996
|
November 23, 2020
|
|
Lineage-specific growth of SARS-CoV-2 B.1.1.7 during the English national lockdown
|
|
1
|
37146
|
December 30, 2020
|
|
September 2022 Sudan Ebola virus disease outbreak in Uganda
|
|
2
|
9440
|
December 9, 2022
|
|
Pangolin web application release
|
|
0
|
16140
|
May 13, 2020
|
|
Initial assessment of the ability of published coronavirus primers sets to detect the Wuhan coronavirus
|
|
0
|
14625
|
January 15, 2020
|
|
A potential SARS-CoV-2 variant of interest (VOI) harboring mutation E484K in the Spike protein was identified within lineage B.1.1.33 circulating in Brazil
|
|
0
|
13911
|
March 11, 2021
|
|
A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology
|
|
0
|
13854
|
April 6, 2020
|
|
First African SARS-CoV-2 genome sequence from Nigerian COVID-19 case
|
|
1
|
54357
|
March 21, 2020
|
|
Emergence of Y453F and Δ69-70HV mutations in a lymphoma patient with long-term COVID-19
|
|
4
|
32803
|
August 7, 2021
|
|
Spike E484K mutation in the first SARS-CoV-2 reinfection case confirmed in Brazil, 2020
|
|
0
|
72613
|
January 10, 2021
|
|
Belgian case of Monkeypox virus linked to outbreak in Portugal
|
|
5
|
27737
|
May 30, 2022
|
|
Remarkable Age Distribution of OC43 vs. SARS-CoV-2 in China
|
|
4
|
28390
|
July 30, 2020
|
|
Updated Nextstain SARS-CoV-2 clade naming strategy
|
|
0
|
60521
|
January 5, 2021
|
|
A draft of the first genome sequence of Monkeypox virus associated with the multi-country outbreak in May 2022 from the Canary Islands, Spain
|
|
4
|
8246
|
June 23, 2022
|
|
SARS-CoV-2 evolution, post-Omicron
|
|
1
|
40241
|
August 30, 2023
|
|
Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance
|
|
0
|
9917
|
November 7, 2022
|
|
Emergence and spread of SARS-CoV-2 P.1 (Gamma) lineage variants carrying Spike mutations 𝚫141-144, N679K or P681H during persistent viral circulation in Amazonas, Brazil
|
|
0
|
9634
|
July 4, 2021
|
|
April 2022 Ebola virus disease case in Equateur Province, DRC, represents a new spillover event
|
|
0
|
9482
|
April 24, 2022
|
|
Oct 2021 EVD case in DRC linked to 2018-2020 Nord Kivu EVD outbreak
|
|
0
|
9111
|
October 13, 2021
|
|
SARS-CoV-2: don't ignore non-canonical genes
|
|
5
|
6571
|
August 14, 2021
|
|
First German genome sequence of Monkeypox virus associated to multi-country outbreak in May 2022
|
|
0
|
8601
|
May 24, 2022
|
|
Analysis of Wuhan Coronavirus: Deja Vu
|
|
3
|
24146
|
February 7, 2020
|
|
Repeated loss of ORF8 expression in circulating SARS-CoV-2 lineages
|
|
0
|
8242
|
April 26, 2023
|
|
Long-term evolution of SARS-CoV-2 in an immunocompromised patient with non-Hodgkin lymphoma
|
|
0
|
8233
|
February 18, 2021
|
|
Temporal signal and the evolutionary rate of 2019 n-CoV using 47 genomes collected by Feb 01 2020
|
|
4
|
11581
|
February 5, 2020
|
|
Two Ebola virus variants circulating during the 2020 Equateur Province outbreak
|
|
0
|
8159
|
August 15, 2020
|
|
A preliminary selection analysis of the South African V501.V2 SARS-CoV-2 clade
|
|
0
|
8050
|
December 29, 2020
|
|
Selection analysis identifies significant mutational changes in Omicron that are likely to influence both antibody neutralization and Spike function (Part 2 of 2)
|
|
0
|
7627
|
December 5, 2021
|