|
Selection analysis identifies significant mutational changes in Omicron that are likely to influence both antibody neutralization and Spike function (Part 1 of 2)
|
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1
|
26105
|
January 20, 2022
|
|
The comparative recency of the proximal ancestors of SARS-CoV-1 and SARS-CoV-2
|
|
1
|
14100
|
December 22, 2022
|
|
Further musings on the tMRCA
|
|
5
|
7504
|
January 27, 2020
|
|
Viral infection and transmission in a large well-traced outbreak caused by the Delta SARS-CoV-2 variant
|
|
0
|
314061
|
July 7, 2021
|
|
Update to observations about putative APOBEC3 deaminase editing in the light of new genomes from USA
|
|
0
|
9918
|
June 5, 2022
|
|
The Sarbecovirus origin of SARS-CoV-2’s furin cleavage site
|
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5
|
34231
|
November 23, 2021
|
|
Time dependence of SARS-CoV-2 substitution rates
|
|
3
|
7139
|
August 31, 2020
|
|
APOBEC3 deaminase editing supports human-to-human transmission in escalating Mpox outbreaks of both Clade Ia and Ib in Kinshasa, Democratic Republic of the Congo, July-September 2024
|
|
0
|
7952
|
October 22, 2024
|
|
Putative host origins of RNA insertions in SARS-CoV-2 genomes
|
|
3
|
22056
|
December 6, 2021
|
|
Transparent analysis of raw COVID-19 data: lack and low quality of raw data
|
|
2
|
7975
|
February 27, 2020
|
|
SARS-CoV-2 reinfection by the new Variant of Concern (VOC) P.1 in Amazonas, Brazil
|
|
3
|
68650
|
January 19, 2021
|
|
Phylogenetic relationship of SARS-CoV-2 sequences from Amazonas with emerging Brazilian variants harboring mutations E484K and N501Y in the Spike protein
|
|
2
|
44336
|
February 27, 2021
|
|
Year-letter Genetic Clade Naming for SARS-CoV-2 on Nextstrain.org
|
|
1
|
16699
|
June 2, 2020
|
|
A fool’s errand: predicting the evolutionary future of the Omicron SARS-CoV-2 lineage
|
|
0
|
7190
|
December 10, 2021
|
|
Clock and TMRCA based on 27 genomes
|
|
5
|
86706
|
January 28, 2020
|
|
nCoV-2019 codon usage and reservoir (not snakes v2)
|
|
3
|
33223
|
January 27, 2020
|
|
First report of COVID-19 in Scotland
|
|
1
|
14789
|
June 9, 2020
|
|
Epidemiological Data from the nCoV-2019 Outbreak: Early Descriptions from Publicly Available Data
|
|
2
|
36202
|
January 25, 2020
|
|
The emergence of the B.1.1.7 lineage in Jordan
|
|
0
|
5849
|
February 27, 2021
|
|
Multiplexed RT-qPCR to screen for SARS-COV-2 B.1.1.7 variants: Preliminary results
|
|
1
|
12107
|
January 25, 2021
|
|
Monkeypox virus genome sequences from multiple lesions indicates co-infection of a UK returning traveller
|
|
1
|
11994
|
June 23, 2022
|
|
Number of mutations along a transmission chain
|
|
0
|
5105
|
January 31, 2020
|
|
Detection of non-B.1.1.7 Spike ∆69/70 sequences (B.1.375) in the United States
|
|
1
|
11314
|
January 14, 2021
|
|
Genomic epidemiology of Mpox virus in Sierra Leone
|
|
0
|
3701
|
May 28, 2025
|
|
Issue with pipelines using bcftools to calling consensus in low-coverage regions
|
|
1
|
7455
|
October 19, 2022
|
|
Naturally occurring indels in multiple coronavirus spikes
|
|
3
|
16647
|
November 23, 2020
|
|
Genomic epidemiology of early introductions of SARS-CoV-2 into the Canadian province of Québec
|
|
0
|
18330
|
September 18, 2020
|
|
September 2022 Sudan Ebola virus disease outbreak in Uganda
|
|
2
|
10383
|
December 9, 2022
|
|
Lineage-specific growth of SARS-CoV-2 B.1.1.7 during the English national lockdown
|
|
1
|
39325
|
December 30, 2020
|
|
Pangolin web application release
|
|
0
|
17508
|
May 13, 2020
|
|
Guinea 2021 EBOV genomes
|
|
0
|
15598
|
March 12, 2021
|
|
Initial assessment of the ability of published coronavirus primers sets to detect the Wuhan coronavirus
|
|
0
|
15379
|
January 15, 2020
|
|
A potential SARS-CoV-2 variant of interest (VOI) harboring mutation E484K in the Spike protein was identified within lineage B.1.1.33 circulating in Brazil
|
|
0
|
14757
|
March 11, 2021
|
|
A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology
|
|
0
|
14386
|
April 6, 2020
|
|
First African SARS-CoV-2 genome sequence from Nigerian COVID-19 case
|
|
1
|
56581
|
March 21, 2020
|
|
Emergence of Y453F and Δ69-70HV mutations in a lymphoma patient with long-term COVID-19
|
|
4
|
35628
|
August 7, 2021
|
|
Belgian case of Monkeypox virus linked to outbreak in Portugal
|
|
5
|
31173
|
May 30, 2022
|
|
Spike E484K mutation in the first SARS-CoV-2 reinfection case confirmed in Brazil, 2020
|
|
0
|
74947
|
January 10, 2021
|
|
A draft of the first genome sequence of Monkeypox virus associated with the multi-country outbreak in May 2022 from the Canary Islands, Spain
|
|
4
|
9403
|
June 23, 2022
|
|
Remarkable Age Distribution of OC43 vs. SARS-CoV-2 in China
|
|
4
|
29333
|
July 30, 2020
|
|
SARS-CoV-2 evolution, post-Omicron
|
|
1
|
44018
|
August 30, 2023
|
|
Updated Nextstain SARS-CoV-2 clade naming strategy
|
|
0
|
61302
|
January 5, 2021
|
|
Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance
|
|
0
|
10890
|
November 7, 2022
|
|
SARS-CoV-2: don't ignore non-canonical genes
|
|
5
|
7752
|
August 14, 2021
|
|
Emergence and spread of SARS-CoV-2 P.1 (Gamma) lineage variants carrying Spike mutations 𝚫141-144, N679K or P681H during persistent viral circulation in Amazonas, Brazil
|
|
0
|
10598
|
July 4, 2021
|
|
April 2022 Ebola virus disease case in Equateur Province, DRC, represents a new spillover event
|
|
0
|
10474
|
April 24, 2022
|
|
First German genome sequence of Monkeypox virus associated to multi-country outbreak in May 2022
|
|
0
|
10248
|
May 24, 2022
|
|
Preliminary report on genomic epidemiology of the 2024 H5N1 influenza A virus outbreak in U.S. cattle (Part 1 of 2)
|
|
3
|
28705
|
May 8, 2024
|
|
Oct 2021 EVD case in DRC linked to 2018-2020 Nord Kivu EVD outbreak
|
|
0
|
9948
|
October 13, 2021
|
|
Repeated loss of ORF8 expression in circulating SARS-CoV-2 lineages
|
|
0
|
9691
|
April 26, 2023
|