Virological

Topic	Replies	Views	Activity
Phylodynamic Analysis \| 176 genomes \| 6 Mar 2020 nCoV-2019 Genomic Epidemiology Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…	17	101697	April 2, 2020
Potential novel SARS-CoV-2 variant of interest from lineage AP.1 with N501Y and additional spike mutations identified in Saxony, Germany nCoV-2019 Genomic Epidemiology	0	845	April 6, 2021
Increasing frequency of SARS-CoV-2 lineages B.1.1.7, P.1 and P.2 and identification of a novel lineage harboring E484Q and N501T spike mutations in Minas Gerais, Southeast Brazil SARS-CoV-2 coronavirus	0	1246	April 8, 2021
Identification of a new B.1.1.33 SARS-CoV-2 Variant of Interest (VOI) circulating in Brazil with mutation E484K and multiple deletions in the amino (N)-terminal domain of the Spike protein nCoV-2019 Genomic Epidemiology	0	1782	April 6, 2021
Outbreak.info: SARS-CoV-2 Mutation Situation Reports Software	2	2416	April 5, 2021
Preliminary in silico assessment of the specificity of published molecular assays and design of new assays using the available whole genome sequences of 2019-nCoV nCoV-2019 Diagnostics and Vaccines	44	19809	April 5, 2021
Detection of the recurrent substitution Q677H in the spike protein of SARS-CoV-2 in cases descended from the lineage B.1.429 nCoV-2019 Genomic Epidemiology	0	1579	March 20, 2021
Ready-to-use global platform for variant detection in SARS-CoV-2 Software and Tools	0	430	April 2, 2021
Global framework for SARS-CoV-2 data analysis: Application to intrahost variation \| Part 2 SARS-CoV-2 Molecular Evolution	1	1409	April 2, 2021
Detection of a large cluster and multiple introductions of the P.1 SARS-CoV-2 Variant of Concern in Massachusetts nCoV-2019 Genomic Epidemiology	0	4409	April 2, 2021
Genomic characterisation of sylvatic yellow fever virus epizootic in Trinidad Yellow fever virus	0	683	March 29, 2021
Detection of the B.1.1.7 and B.1.351 SARS-CoV-2 variants in Bangladesh nCoV-2019 Genomic Epidemiology	0	886	March 26, 2021
Assemblies of putative SARS-CoV2-spike-encoding mRNA sequences for vaccines BNT-162b2 and mRNA-1273 nCoV-2019 Diagnostics and Vaccines	0	1972	March 24, 2021
Release - 4 EBOV genomes from Guinea 2021 outbreak Guinea 2021	0	4573	March 12, 2021
The ongoing evolution of variants of concern and interest of SARS-CoV-2 in Brazil revealed by convergent indels in the amino (N)-terminal domain of the Spike protein nCoV-2019 Genomic Epidemiology	1	5495	March 18, 2021
Recombinant SARS-CoV-2 genomes involving lineage B.1.1.7 in the UK SARS-CoV-2 Molecular Evolution	0	10726	March 17, 2021
Pango Lineage Nomenclature: provisional rules for naming recombinant lineages SARS-CoV-2 coronavirus	0	1263	March 17, 2021
Integration of JBrowse 2 genome browser with Nextstrain Software and Tools	0	544	March 16, 2021
Tracking SARS-CoV-2 VOC 202012/01 (lineage B.1.1.7) dissemination in Portugal: insights from nationwide RT-PCR Spike gene drop out data SARS-CoV-2 coronavirus	10	15995	March 16, 2021
A potential SARS-CoV-2 variant of interest (VOI) harboring mutation E484K in the Spike protein was identified within lineage B.1.1.33 circulating in Brazil nCoV-2019 Genomic Epidemiology	0	7375	March 11, 2021
Guinea 2021 EBOV outbreak Guinea 2021	0	12594	March 12, 2021
Guinea 2021 EBOV genomes Guinea 2021	0	6055	March 12, 2021
The emergence and ongoing convergent evolution of the N501Y lineages coincided with a major global shift in the SARS-Cov-2 selective landscape SARS-CoV-2 Molecular Evolution	1	5392	March 6, 2021
Emergence and spread of SARS-CoV-2 lineage B.1.1.7 in Brazil SARS-CoV-2 coronavirus	0	1525	March 4, 2021
The emergence of the B.1.1.7 lineage in Jordan SARS-CoV-2 coronavirus	0	2241	February 27, 2021
Phylogenetic relationship of SARS-CoV-2 sequences from Amazonas with emerging Brazilian variants harboring mutations E484K and N501Y in the Spike protein nCoV-2019 Genomic Epidemiology	2	24804	February 27, 2021
Global framework for SARS-CoV-2 data analysis: Application to intrahost variation \| Part 1 SARS-CoV-2 Molecular Evolution	0	1123	February 22, 2021
Spike protein sequences of Cambodian, Thai and Japanese bat sarbecoviruses provide insights into the natural evolution of the Receptor Binding Domain and S1/S2 cleavage site	0	7734	February 21, 2021
Long-term evolution of SARS-CoV-2 in an immunocompromised patient with non-Hodgkin lymphoma SARS-CoV-2 Molecular Evolution	0	2861	February 18, 2021
Resurgence of SARS-CoV-2 19B clade corresponds with possible convergent evolution SARS-CoV-2 coronavirus	2	1519	February 18, 2021

Phylodynamic Analysis | 176 genomes | 6 Mar 2020

nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…