Virological

Topic	Replies	Views	Activity
Phylodynamic Analysis \| 176 genomes \| 6 Mar 2020 nCoV-2019 Genomic Epidemiology Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…	17	142076	April 2, 2020
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Novel Clade I genome sequences from the ongoing mpox virus outbreak of Kamituga in South Kivu province, Democratic Republic of Congo MPXV	2	6594	March 14, 2024
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Chikungunya virus Genomic characterization during an outbreak in Kedougou, Southeastern Senegal, 2023 Chikungunya virus	0	1538	November 15, 2023
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SARS-CoV-2 evolution, post-Omicron SARS-CoV-2 Molecular Evolution	1	39878	August 30, 2023
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Update to observations about putative APOBEC3 deaminase editing in the light of new genomes from USA Evolution	0	8382	June 5, 2022
Electron microscopy and a sequence-independent, single-primer amplification (SISPA) viromics approach for monkeypox virus genome determination Genome Reports	0	5928	September 14, 2022
Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance nCoV-2019 Genomic Epidemiology	0	9784	November 7, 2022
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Methods for molecular transmission cluster detection Methods	1	3957	May 30, 2023
An APOBEC3 molecular clock to estimate the date of emergence of hMPXV Evolution	0	12309	August 6, 2022
Chikungunya in Paraguay during the first country-wide outbreak: new clade of ECSA genotype harboring structural and non-structural protein mutations Chikungunya virus	0	8096	May 26, 2023
Repeated loss of ORF8 expression in circulating SARS-CoV-2 lineages SARS-CoV-2 coronavirus	0	8017	April 26, 2023
First emergence of Marburg virus in Equatorial Guinea, 2023 Marburg virus	0	8723	March 23, 2023
Wastewater samples CANNOT be used for genome assembly Software and Tools	7	7110	March 3, 2023

Phylodynamic Analysis | 176 genomes | 6 Mar 2020

nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…