Virological

Topic	Replies	Views	Activity
Phylodynamic Analysis \| 176 genomes \| 6 Mar 2020 nCoV-2019 Genomic Epidemiology Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…	17	131006	April 2, 2020
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Chikungunya in Paraguay during the first country-wide outbreak: new clade of ECSA genotype harboring structural and non-structural protein mutations Chikungunya virus	0	615	May 26, 2023
Repeated loss of ORF8 expression in circulating SARS-CoV-2 lineages SARS-CoV-2 coronavirus	0	3568	April 26, 2023
First emergence of Marburg virus in Equatorial Guinea, 2023 Marburg virus	0	5546	March 23, 2023
Wastewater samples CANNOT be used for genome assembly Software and Tools	7	3862	March 3, 2023
Preliminary analysis of selected Sudan Ebola Virus isolates from the 2022 Uganda outbreak Ebolavirus	0	2842	January 24, 2023
Preliminary Results from two novel “ARTIC-style” amplicon based sequencing approaches for RSV A and RSV B	0	4129	December 22, 2022
The comparative recency of the proximal ancestors of SARS-CoV-1 and SARS-CoV-2 nCoV-2019 Evolutionary History	1	9288	December 22, 2022
Preliminary Genomic Analysis of the RSV Surge 2022 in Massachusetts Reveals a Polyphyletic Epidemic Driven by the Expansion of Multiple Lineages	0	6847	December 9, 2022
September 2022 Sudan Ebola virus disease outbreak in Uganda Ebolavirus	2	6828	December 9, 2022
SARS-CoV-2 evolution, post-Omicron SARS-CoV-2 Molecular Evolution	0	31806	November 25, 2022
Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance nCoV-2019 Genomic Epidemiology	0	6817	November 7, 2022
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Issue with pipelines using bcftools to calling consensus in low-coverage regions Software and Tools	1	4153	October 19, 2022
Monkeypox virus in Canada: the first four months Genome Reports	0	3756	October 18, 2022
# Genomic accordions may hold the key to Monkeypox Clade IIb's increased transmissibility Evolution	0	2382	October 1, 2022
Electron microscopy and a sequence-independent, single-primer amplification (SISPA) viromics approach for monkeypox virus genome determination Genome Reports	0	3356	September 14, 2022
First-ever outbreak of Marburg virus disease declared in Ghana, 2022 Marburg virus	0	5009	August 25, 2022
August 2022 EVD case in DRC linked to 2018-2020 Nord Kivu EVD outbreak Ebolavirus	0	6829	August 22, 2022
Draft genome of the first case of the Monkeypox virus in Chile associated with the 2022 outbreak Genome Reports	0	3671	August 10, 2022
Linking Genotype to Phenotype: Further Exploration of Mutations in SARS-CoV-2 Associated with Mild or Severe Outcomes SARS-CoV-2 coronavirus	0	4184	April 15, 2022
First Monkeypox virus sequence from northern Mexico Genome Reports	0	4397	July 8, 2022
Monkeypox virus genome sequence from an imported case in Colombia Genome Reports	0	4006	June 29, 2022
First monkeypox virus genome sequence from Brazil Genome Reports	0	9873	June 9, 2022
Whole genome sequences of Monkey pox virus from two cases in Madrid, Spain, May-June 2022 Genome Reports	0	4056	June 24, 2022
A draft of the first genome sequence of Monkeypox virus associated with the multi-country outbreak in May 2022 from the Canary Islands, Spain Genome Reports	4	5999	June 23, 2022
Monkeypox virus genome sequences from multiple lesions indicates co-infection of a UK returning traveller Genome Reports	1	8863	June 23, 2022
Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus Monkeypox	2	55873	June 22, 2022

Phylodynamic Analysis | 176 genomes | 6 Mar 2020

nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…