Virological

Topic	Replies	Views	Activity
Phylodynamic Analysis \| 176 genomes \| 6 Mar 2020 nCoV-2019 Genomic Epidemiology Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…	17	136174	April 2, 2020
Preliminary Results from two novel “ARTIC-style” amplicon based sequencing approaches for RSV A and RSV B	1	6618	December 4, 2023
Chikungunya virus Genomic characterization during an outbreak in Kedougou, Southeastern Senegal, 2023 Chikungunya virus	0	239	November 15, 2023
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SARS-CoV-2 evolution, post-Omicron SARS-CoV-2 Molecular Evolution	1	36671	August 30, 2023
NIAID Data Ecosystem Discovery Portal Software	0	1131	August 16, 2023
Update to observations about putative APOBEC3 deaminase editing in the light of new genomes from USA Evolution	0	7082	June 5, 2022
Electron microscopy and a sequence-independent, single-primer amplification (SISPA) viromics approach for monkeypox virus genome determination Genome Reports	0	4984	September 14, 2022
Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance nCoV-2019 Genomic Epidemiology	0	8644	November 7, 2022
Vibrio Cholerae Genomics Other Pathogens	0	1550	June 30, 2023
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NIH Postdoctoral Fellowship in Virus Evolution and Spillover Jobs and Opportunities	0	1327	June 23, 2023
Towards Pandemic-Scale Ancestral Recombination Graphs of SARS-CoV-2 Software and Tools	0	2342	June 9, 2023
Methods for molecular transmission cluster detection Methods	1	2479	May 30, 2023
An APOBEC3 molecular clock to estimate the date of emergence of hMPXV Evolution	0	11104	August 6, 2022
Chikungunya in Paraguay during the first country-wide outbreak: new clade of ECSA genotype harboring structural and non-structural protein mutations Chikungunya virus	0	4537	May 26, 2023
Repeated loss of ORF8 expression in circulating SARS-CoV-2 lineages SARS-CoV-2 coronavirus	0	6464	April 26, 2023
First emergence of Marburg virus in Equatorial Guinea, 2023 Marburg virus	0	7647	March 23, 2023
Wastewater samples CANNOT be used for genome assembly Software and Tools	7	5813	March 3, 2023
Preliminary analysis of selected Sudan Ebola Virus isolates from the 2022 Uganda outbreak Ebolavirus	0	4509	January 24, 2023
The comparative recency of the proximal ancestors of SARS-CoV-1 and SARS-CoV-2 nCoV-2019 Evolutionary History	1	11348	December 22, 2022
Preliminary Genomic Analysis of the RSV Surge 2022 in Massachusetts Reveals a Polyphyletic Epidemic Driven by the Expansion of Multiple Lineages	0	10029	December 9, 2022
September 2022 Sudan Ebola virus disease outbreak in Uganda Ebolavirus	2	8471	December 9, 2022
Issue with pipelines using bcftools to calling consensus in low-coverage regions Software and Tools	1	5770	October 19, 2022
Monkeypox virus in Canada: the first four months Genome Reports	0	5295	October 18, 2022
# Genomic accordions may hold the key to Monkeypox Clade IIb's increased transmissibility Evolution	0	3430	October 1, 2022
First-ever outbreak of Marburg virus disease declared in Ghana, 2022 Marburg virus	0	6509	August 25, 2022
August 2022 EVD case in DRC linked to 2018-2020 Nord Kivu EVD outbreak Ebolavirus	0	8680	August 22, 2022
Draft genome of the first case of the Monkeypox virus in Chile associated with the 2022 outbreak Genome Reports	0	5599	August 10, 2022
Linking Genotype to Phenotype: Further Exploration of Mutations in SARS-CoV-2 Associated with Mild or Severe Outcomes SARS-CoV-2 coronavirus	0	5764	April 15, 2022

Phylodynamic Analysis | 176 genomes | 6 Mar 2020

nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…