Virological

Topic	Replies	Views	Activity
Phylodynamic Analysis \| 176 genomes \| 6 Mar 2020 nCoV-2019 Genomic Epidemiology Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…	17	108800	April 2, 2020
Genomic surveillance tracks the first communitary outbreak of Delta (B.1.617.2) variant in Brazil nCoV-2019 Genomic Epidemiology	0	1143	July 20, 2021
Real-time genomic surveillance during the 2021 re-emergence of the yellow fever virus in Rio Grande do Sul State, Brazil Yellow fever virus	0	182	July 19, 2021
Emergence and spread of a B.1.1.28-derived lineage with Q675H and Q677H Spike mutations in Uruguay SARS-CoV-2 coronavirus	0	588	July 15, 2021
Emergence of a putative novel SARS-CoV-2 P.X lineage harboring N234P and E471Q spike protein mutations in Southern Brazil nCoV-2019 Genomic Epidemiology	0	475	July 14, 2021
High rate of mutational events in SARS-CoV-2 genomes across Brazilian SARS-CoV-2 coronavirus	0	433	July 12, 2021
Genomic Surveillance of SARS-CoV-2 in the State of Rio de Janeiro, Brazil: technical briefing nCoV-2019 Genomic Epidemiology	4	3870	July 7, 2021
Viral infection and transmission in a large well-traced outbreak caused by the Delta SARS-CoV-2 variant nCoV-2019 Genomic Epidemiology	0	105648	July 7, 2021
Emergence and spread of SARS-CoV-2 P.1 (Gamma) lineage variants carrying Spike mutations 𝚫141-144, N679K or P681H during persistent viral circulation in Amazonas, Brazil nCoV-2019 Genomic Epidemiology	0	2856	July 4, 2021
Detection of potential new SARS-CoV-2 Gamma-related lineage in Tocantins SARS-CoV-2 coronavirus	0	563	July 1, 2021
Preliminary in silico assessment of the specificity of published molecular assays and design of new assays using the available whole genome sequences of 2019-nCoV nCoV-2019 Diagnostics and Vaccines	52	22671	June 21, 2021
Genomic Gymnastics in the Nucleocapsid Gene of SARS-CoV-2 During Transmission in Humans: Transposition of ACGAAC and Creation of the novel N2 Gene SARS-CoV-2 Molecular Evolution	4	1564	June 18, 2021
Early appearance of two distinct genomic lineages of SARS-CoV-2 in different Wuhan wildlife markets suggests SARS-CoV-2 has a natural origin SARS-CoV-2 coronavirus	3	22194	June 7, 2021
Recent evolution and international transmission of SARS-CoV-2 clade 19B (Pango A lineages) SARS-CoV-2 Molecular Evolution	0	1548	June 2, 2021
RASCL: Rapid assessment of SARS-COV-2 clades enabled through molecular sequence analysis and its application to B.1.617.1 and B.1.617.2 SARS-CoV-2 Molecular Evolution	0	1283	May 28, 2021
First reported cases of SARS-CoV-2 sub-lineage B.1.617.2 in Brazil: an outbreak in a ship and alert for spread SARS-CoV-2 coronavirus	0	2289	May 26, 2021
Spike protein sequences of Cambodian, Thai and Japanese bat sarbecoviruses provide insights into the natural evolution of the Receptor Binding Domain and S1/S2 cleavage site	1	13320	May 25, 2021
Detection of Spike Mutations; D80G, T95I, G142D, △144, N439K, E484K, P681H, I1130V, and D1139H, in B.1.1.482 Lineage (AV.1) Samples from South Yorkshire, UK nCoV-2019 Genomic Epidemiology	1	5781	May 23, 2021
Spread of endemic SARS-CoV-2 lineages in Russia nCoV-2019 Genomic Epidemiology	2	3654	May 24, 2021
Tackling Rumors of a Suspicious Origin of nCoV2019 nCoV-2019 Evolutionary History	23	63079	May 21, 2021
Identification of SARS-CoV-2 P.1-related lineages in Brazil provides new insights about the mechanisms of emergence of Variants of Concern nCoV-2019 Genomic Epidemiology	0	5264	May 16, 2021
Emergence of SARS-CoV-2 lineage A.27 in Germany, expressing viral spike proteins with several amino acid replacements of interest, including L18F, L452R, and N501Y in the absence of D614G nCoV-2019 Genomic Epidemiology	0	1373	May 14, 2021
Stepwise evolution and exceptional conservation of ORF1a/b overlap SARS-CoV-2 Molecular Evolution	0	829	May 12, 2021
The ongoing evolution of variants of concern and interest of SARS-CoV-2 in Brazil revealed by convergent indels in the amino (N)-terminal domain of the Spike protein nCoV-2019 Genomic Epidemiology	3	8598	April 28, 2021
Mutations arising in SARS-CoV-2 spike on sustained human-to-human transmission and human-to-animal passage SARS-CoV-2 coronavirus	8	36133	April 27, 2021
Novel sublineage within B.1.1.1 currently expanding in Peru and Chile, with a convergent deletion in the ORF1a gene (Δ3675-3677) and a novel deletion in the Spike gene (Δ246-252, G75V, T76I, L452Q, F490S, T859N) nCoV-2019 Genomic Epidemiology	2	21311	April 25, 2021
SARS-CoV-2 reinfection by the new Variant of Concern (VOC) P.1 in Amazonas, Brazil nCoV-2019 Genomic Epidemiology	3	40828	January 19, 2021
Outbreak.info: SARS-CoV-2 Mutation Situation Reports Software	2	4643	April 5, 2021
Release - 4 EBOV genomes from Guinea 2021 outbreak Guinea 2021	0	6462	March 12, 2021
Phylogenetic and Recombination Analysis of SARS-CoV-2-like Viruses nCoV-2019 Evolutionary History	1	2369	April 17, 2021

Phylodynamic Analysis | 176 genomes | 6 Mar 2020

nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…