Virological

Topic	Replies	Views	Activity
Phylodynamic Analysis \| 176 genomes \| 6 Mar 2020 nCoV-2019 Genomic Epidemiology Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…	17	88675	April 2, 2020
Naturally occurring indels in multiple coronavirus spikes SARS-CoV-2 coronavirus	3	3856	November 23, 2020
Microbial Metagenomics Uncovers the First Rabbit Haemorrhagic Disease Virus Case in Sub-Saharan Africa	0	641	November 21, 2020
Whole-Genome Sequence of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) obtained from a South African Coronavirus Disease 2019 (COVID-19) Patient Genome Reports	0	25031	April 1, 2020
Genomic epidemiology of hCoV-19 in Guangdong Province, China nCoV-2019 Genomic Epidemiology	0	7861	March 9, 2020
Sarbecovirus comparative genomics elucidates gene content of SARS-CoV-2 and functional impact of COVID-19 pandemic mutations SARS-CoV-2 Molecular Evolution	0	1639	June 9, 2020
SARS-CoV-2 spatial structure 2: New evidence from RNA and protein sequences nCoV-2019 Genomic Epidemiology	0	1443	July 22, 2020
A resource for comparing SARS-CoV2 to other coronaviruses: Coordinate mapping and residue annotation Software and Tools	0	1713	July 27, 2020
Preliminary in silico assessment of the specificity of published molecular assays and design of new assays using the available whole genome sequences of 2019-nCoV nCoV-2019 Diagnostics and Vaccines	34	16281	October 23, 2020
Tackling Rumors of a Suspicious Origin of nCoV2019 nCoV-2019 Evolutionary History	22	48820	October 22, 2020
Postdoc / Robertson & Yuan Labs / Glasgow Jobs and Opportunities	1	1259	October 3, 2020
Postdoc / Ladner Lab / Flagstaff Jobs and Opportunities	0	907	September 24, 2020
On the veracity of RaTG13 nCoV-2019 Evolutionary History	8	4701	September 19, 2020
Genomic epidemiology of early introductions of SARS-CoV-2 into the Canadian province of Québec nCoV-2019 Genomic Epidemiology	0	9471	September 18, 2020
New online resource: COVID-19 CoV Genetics browser Software and Tools	0	1774	September 3, 2020
Time dependence of SARS-CoV-2 substitution rates nCoV-2019 Evolutionary History	3	2033	August 31, 2020
SARS-CoV-2 genomic epidemiology in Sierra Leone nCoV-2019 Genomic Epidemiology	0	1496	August 26, 2020
Genomic epidemiology of the early stages of SARS-CoV-2 outbreak in Russia nCoV-2019 Genomic Epidemiology	5	2107	August 21, 2020
Serratus: The ultra-deep search to discover novel coronaviruses Software and Tools	6	3816	August 17, 2020
Two Ebola virus variants circulating during the 2020 Equateur Province outbreak Ebolavirus	0	3201	August 15, 2020
Postdoc / Andersen Lab Jobs and Opportunities	0	972	August 10, 2020
The Sarbecovirus origin of SARS-CoV-2’s furin cleavage site nCoV-2019 Evolutionary History	4	5765	August 9, 2020
Remarkable Age Distribution of OC43 vs. SARS-CoV-2 in China	4	22307	July 30, 2020
Masking strategies for SARS-CoV-2 alignments Software and Tools	11	5239	July 29, 2020
Issues with SARS-CoV-2 sequencing data nCoV-2019 Genomic Epidemiology	11	20886	July 29, 2020
NLP software for sampling location metadata enrichment Software	0	980	July 23, 2020
How many imports of virus from Asian and Europe into USA? nCoV-2019 Genomic Epidemiology	0	1153	July 19, 2020
Phylogenetic analysis of SARS-CoV-2 in DRC nCoV-2019 Genomic Epidemiology	0	2373	July 17, 2020
New SARS-CoV-2 Genomes from Nigeria Reveals Dominance of Viruses with Spike Protein Mutation (D614G), and Additional Virus Lineages in Circulation Genome Reports	0	5825	July 12, 2020
Spike protein D614G variant paper published in Cell today nCoV-2019 Genomic Epidemiology	2	2832	July 3, 2020

Phylodynamic Analysis | 176 genomes | 6 Mar 2020

nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…