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Phylodynamic Analysis | 176 genomes | 6 Mar 2020
nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…

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Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2
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Spike E484K mutation in the first SARS-CoV-2 reinfection case confirmed in Brazil, 2020
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Spike E484K mutation in the first SARS-CoV-2 reinfection case confirmed in Brazil
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SARS-CoV-2 diversity in Uganda, December, 2020
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Updated Nextstain SARS-CoV-2 clade naming strategy
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Emergence of Y453F and Δ69-70HV mutations in a lymphoma patient with long-term COVID-19
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Identification of a novel SARS-CoV-2 Spike 69-70 deletion lineage circulating in the United States
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Transmission of SARS-CoV-2 Lineage B.1.1.7 in England: Insights from linking epidemiological and genetic data
nCoV-2019 Genomic Epidemiology
1 5565 December 30, 2020
Lineage-specific growth of SARS-CoV-2 B.1.1.7 during the English national lockdown
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1 14811 December 30, 2020
A preliminary selection analysis of the South African V501.V2 SARS-CoV-2 clade
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Detection of SARS-CoV-2 P681H Spike Protein Variant in Nigeria
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Issues with SARS-CoV-2 sequencing data
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Masking strategies for SARS-CoV-2 alignments
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Preliminary genomic characterisation of an emergent SARS-CoV-2 lineage in the UK defined by a novel set of spike mutations
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Postdoc HIV Databases, Los Alamos National Laboratory
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Genomic epidemiology of the early stages of SARS-CoV-2 outbreak in Russia
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Naturally occurring indels in multiple coronavirus spikes
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Microbial Metagenomics Uncovers the First Rabbit Haemorrhagic Disease Virus Case in Sub-Saharan Africa
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Sarbecovirus comparative genomics elucidates gene content of SARS-CoV-2 and functional impact of COVID-19 pandemic mutations
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SARS-CoV-2 spatial structure 2: New evidence from RNA and protein sequences
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A resource for comparing SARS-CoV2 to other coronaviruses: Coordinate mapping and residue annotation
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Preliminary in silico assessment of the specificity of published molecular assays and design of new assays using the available whole genome sequences of 2019-nCoV
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