Novel 2019 coronavirus


nCoV-2019 Diagnostics and Vaccines nCoV-2019 Evolutionary History Software and Tools Genome Reports nCoV-2019 Genomic Epidemiology
Topic Replies Views Activity
About the Novel 2019 coronavirus category
Novel 2019 coronavirus
1 2935 January 9, 2020
Masking strategies for SARS-CoV-2 alignments
Software and Tools
9 2296 July 10, 2020
Preliminary in silico assessment of the specificity of published molecular assays and design of new assays using the available whole genome sequences of 2019-nCoV
nCoV-2019 Diagnostics and Vaccines
29 13008 July 7, 2020
Spike protein D614G variant paper published in Cell today
nCoV-2019 Genomic Epidemiology
3 694 July 3, 2020
Genome-sampler: reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity
Software and Tools
1 337 July 1, 2020
Tackling Rumors of a Suspicious Origin of nCoV2019
nCoV-2019 Evolutionary History
20 38703 June 30, 2020
Identification of a common deletion in the spike protein of SARS-CoV-2
Novel 2019 coronavirus
16 8094 June 24, 2020
Serratus: The ultra-deep search to discover novel coronaviruses
Software and Tools
4 1597 June 17, 2020
Genomic surveillance of SARS-CoV-2 reveals community transmission of a major lineage during the early pandemic phase in Brazil
nCoV-2019 Genomic Epidemiology
1 2236 June 11, 2020
Missed ORFs in nCoV?
nCoV-2019 Evolutionary History
2 3451 June 9, 2020
Sarbecovirus comparative genomics elucidates gene content of SARS-CoV-2 and functional impact of COVID-19 pandemic mutations
Novel 2019 coronavirus
1 509 June 9, 2020
First report of COVID-19 in Scotland
Genome Reports
2 6751 June 9, 2020
Early analysis of 1,093 SARS-CoV2 intra-host variation datasets and comparison with sites under selection
Genome Reports
3 1491 June 8, 2020
Testing SARS-CoV-2 spatial phylogenetic structure
Novel 2019 coronavirus
1 699 June 6, 2020
Introduction and spread of SARS-CoV-2 in the greater Boston area
nCoV-2019 Genomic Epidemiology
1 2589 June 4, 2020
Year-letter Genetic Clade Naming for SARS-CoV-2 on Nextstrain.org
Software and Tools
2 4230 June 2, 2020
Introduction and local transmission of SARS-CoV-2 cases in Kenya
Genome Reports
1 4113 June 2, 2020
SARS-CoV-2 Genomes from Nigeria Reveal Community Transmission, Multiple Virus Lineages and Spike Protein Mutation Associated with Higher Transmission and Pathogenicity
Genome Reports
1 9460 May 29, 2020
Issues with SARS-CoV-2 sequencing data
nCoV-2019 Genomic Epidemiology
10 12768 May 28, 2020
Testing recombination in the pandemic SARS-CoV-2 strains
nCoV-2019 Genomic Epidemiology
1 918 May 28, 2020
Gained stops in data from The Peter Doherty Institute for Infection and Immunity
Genome Reports
10 1451 May 18, 2020
Common Microdeletions in SARS-CoV-2 Sequences
nCoV-2019 Genomic Epidemiology
1 1146 May 15, 2020
Pangolin web application release
Software and Tools
1 2567 May 13, 2020
Selection analysis of GISAID SARS-CoV-2 data
nCoV-2019 Evolutionary History
4 4920 May 5, 2020
Early phylodynamics analysis of the COVID-19 epidemics in France using 194 genomes - April 10, 2020
nCoV-2019 Genomic Epidemiology
4 2872 April 29, 2020
An 81 base-pair deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (Jan-Mar 2020)
Genome Reports
1 3606 April 22, 2020
A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology
Novel 2019 coronavirus
1 9217 April 6, 2020
Phylodynamic Analysis | 176 genomes | 6 Mar 2020
nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…

18 77905 April 2, 2020
Whole-Genome Sequence of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) obtained from a South African Coronavirus Disease 2019 (COVID-19) Patient
Novel 2019 coronavirus
1 18403 April 1, 2020
Phylogeography with whole genomes 24 Mar 2020
nCoV-2019 Genomic Epidemiology
1 4137 March 24, 2020