Novel 2019 coronavirus


Genome Reports nCoV-2019 Evolutionary History Software and Tools nCoV-2019 Diagnostics and Vaccines nCoV-2019 Genomic Epidemiology
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About the Novel 2019 coronavirus category
Novel 2019 coronavirus
1 2728 January 9, 2020
Preliminary in silico assessment of the specificity of published molecular assays and design of new assays using the available whole genome sequences of 2019-nCoV
nCoV-2019 Diagnostics and Vaccines
25 11658 June 5, 2020
Early analysis of 1,093 SARS-CoV2 intra-host variation datasets and comparison with sites under selection
Genome Reports
2 692 June 5, 2020
Introduction and spread of SARS-CoV-2 in the greater Boston area
nCoV-2019 Genomic Epidemiology
1 597 June 4, 2020
Year-letter Genetic Clade Naming for SARS-CoV-2 on Nextstain.org
Software and Tools
2 2550 June 2, 2020
Introduction and local transmission of SARS-CoV-2 cases in Kenya
Genome Reports
1 2599 June 2, 2020
SARS-CoV-2 Genomes from Nigeria Reveal Community Transmission, Multiple Virus Lineages and Spike Protein Mutation Associated with Higher Transmission and Pathogenicity
Genome Reports
1 7530 May 29, 2020
Masking strategies for SARS-CoV-2 alignments
Software and Tools
2 1264 May 28, 2020
Issues with SARS-CoV-2 sequencing data
nCoV-2019 Genomic Epidemiology
10 10171 May 28, 2020
Testing recombination in the pandemic SARS-CoV-2 strains
nCoV-2019 Genomic Epidemiology
1 594 May 28, 2020
Tackling Rumors of a Suspicious Origin of nCoV2019
nCoV-2019 Evolutionary History
17 32220 May 25, 2020
Gained stops in data from The Peter Doherty Institute for Infection and Immunity
Genome Reports
10 1140 May 18, 2020
Common Microdeletions in SARS-CoV-2 Sequences
nCoV-2019 Genomic Epidemiology
1 748 May 15, 2020
Pangolin web application release
Software and Tools
1 1698 May 13, 2020
Selection analysis of GISAID SARS-CoV-2 data
nCoV-2019 Evolutionary History
4 4231 May 5, 2020
Early phylodynamics analysis of the COVID-19 epidemics in France using 194 genomes - April 10, 2020
nCoV-2019 Genomic Epidemiology
4 2358 April 29, 2020
An 81 base-pair deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (Jan-Mar 2020)
Genome Reports
1 2857 April 22, 2020
Identification of a common deletion in the spike protein of SARS-CoV-2
Novel 2019 coronavirus
13 6751 April 21, 2020
A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology
Novel 2019 coronavirus
1 8632 April 6, 2020
Phylodynamic Analysis | 176 genomes | 6 Mar 2020
nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…

18 74118 April 2, 2020
Whole-Genome Sequence of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) obtained from a South African Coronavirus Disease 2019 (COVID-19) Patient
Novel 2019 coronavirus
1 15551 April 1, 2020
Phylogeography with whole genomes 24 Mar 2020
nCoV-2019 Genomic Epidemiology
1 3828 March 24, 2020
First African SARS-CoV-2 genome sequence from Nigerian COVID-19 case
Genome Reports
2 35766 March 21, 2020
Update report of COVID-19 in Scotland: continuing introductions & transmissions
Genome Reports
4 3576 March 18, 2020
The Proximal Origin of SARS-CoV-2
nCoV-2019 Evolutionary History
5 182667 March 18, 2020
Response to “On the origin and continuing evolution of SARS-CoV-2”
nCoV-2019 Genomic Epidemiology
12 91537 March 16, 2020
Phylodynamic Analyses of outbreaks in China, Italy, Washington State (USA), and the Diamond Princess
nCoV-2019 Genomic Epidemiology
2 9320 March 13, 2020
Alignment of 58 Sarbecovirus genomes for conservation analysis of SARS-CoV-2
nCoV-2019 Evolutionary History
2 3049 March 12, 2020
Phylodynamic analysis of a densely sampled COVID19 outbreak in Weifang, China
nCoV-2019 Genomic Epidemiology
1 2980 March 10, 2020
Update report of COVID-19 in Scotland: multiple introductions
Genome Reports
1 3778 March 10, 2020