SARS-CoV-2 coronavirus   nCoV-2019 Genomic Epidemiology


Topic Replies Views Activity
Phylodynamic Analysis | 176 genomes | 6 Mar 2020

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…

17 104226 April 2, 2020
About the nCoV-2019 Genomic Epidemiology category
0 1734 January 31, 2020
Genomic Surveillance of SARS-CoV-2 in the State of Rio de Janeiro, Brazil: technical briefing
2 1841 May 4, 2021
Spread of endemic SARS-CoV-2 lineages in Russia
1 1592 April 30, 2021
The ongoing evolution of variants of concern and interest of SARS-CoV-2 in Brazil revealed by convergent indels in the amino (N)-terminal domain of the Spike protein
3 7478 April 28, 2021
Novel sublineage within B.1.1.1 currently expanding in Peru and Chile, with a convergent deletion in the ORF1a gene (Δ3675-3677) and a novel deletion in the Spike gene (Δ246-252, G75V, T76I, L452Q, F490S, T859N)
2 13655 April 25, 2021
SARS-CoV-2 reinfection by the new Variant of Concern (VOC) P.1 in Amazonas, Brazil
3 36824 January 19, 2021
Issues with SARS-CoV-2 sequencing data
13 30874 April 13, 2021
Detection of the recurrent substitution Q677H in the spike protein of SARS-CoV-2 in cases descended from the lineage B.1.429
0 2162 March 20, 2021
Potential novel SARS-CoV-2 variant of interest from lineage AP.1 with N501Y and additional spike mutations identified in Saxony, Germany
0 1943 April 6, 2021
Identification of a new B.1.1.33 SARS-CoV-2 Variant of Interest (VOI) circulating in Brazil with mutation E484K and multiple deletions in the amino (N)-terminal domain of the Spike protein
0 4370 April 6, 2021
Detection of a large cluster and multiple introductions of the P.1 SARS-CoV-2 Variant of Concern in Massachusetts
0 5257 April 2, 2021
Detection of the B.1.1.7 and B.1.351 SARS-CoV-2 variants in Bangladesh
0 1643 March 26, 2021
A potential SARS-CoV-2 variant of interest (VOI) harboring mutation E484K in the Spike protein was identified within lineage B.1.1.33 circulating in Brazil
0 8768 March 11, 2021
Phylogenetic relationship of SARS-CoV-2 sequences from Amazonas with emerging Brazilian variants harboring mutations E484K and N501Y in the Spike protein
2 26588 February 27, 2021
B.1.258∆, a SARS-CoV-2 variant with ∆H69/∆V70 in the Spike protein circulating in the Czech Republic and Slovakia
1 19071 February 11, 2021
Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2
0 15960 January 13, 2021
Genomic characterisation of an emergent SARS-CoV-2 lineage in Manaus: preliminary findings
1 113631 January 25, 2021
Spatio-temporal heterogeneity and the spread of lineage B.1.1.7 in the United Kingdom
1 2743 January 20, 2021
Phylogenetic evidence that B.1.1.7 has been circulating in the United States since early- to mid-November
0 16452 January 19, 2021
Detection of non-B.1.1.7 Spike ∆69/70 sequences (B.1.375) in the United States
1 5393 January 14, 2021
Spike E484K mutation in the first SARS-CoV-2 reinfection case confirmed in Brazil, 2020
0 56141 January 10, 2021
Spike E484K mutation in the first SARS-CoV-2 reinfection case confirmed in Brazil
0 1219 January 10, 2021
Updated Nextstain SARS-CoV-2 clade naming strategy
0 6334 January 5, 2021
Emergence of Y453F and Δ69-70HV mutations in a lymphoma patient with long-term COVID-19
3 16902 January 4, 2021
Transmission of SARS-CoV-2 Lineage B.1.1.7 in England: Insights from linking epidemiological and genetic data
1 14022 December 30, 2020
Lineage-specific growth of SARS-CoV-2 B.1.1.7 during the English national lockdown
1 22582 December 30, 2020
Detection of SARS-CoV-2 P681H Spike Protein Variant in Nigeria
0 10916 December 23, 2020
Preliminary genomic characterisation of an emergent SARS-CoV-2 lineage in the UK defined by a novel set of spike mutations
4 292582 December 21, 2020
Genomic epidemiology of the early stages of SARS-CoV-2 outbreak in Russia
6 3786 December 8, 2020