Novel 2019 coronavirus   nCoV-2019 Genomic Epidemiology


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Phylodynamic Analysis | 176 genomes | 6 Mar 2020

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…

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About the nCoV-2019 Genomic Epidemiology category
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Genomic surveillance of SARS-CoV-2 reveals community transmission of a major lineage during the early pandemic phase in Brazil
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Testing recombination in the pandemic SARS-CoV-2 strains
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Early phylodynamics analysis of the COVID-19 epidemics in France using 194 genomes - April 10, 2020
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Phylogeography with whole genomes 24 Mar 2020
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Phylodynamic Analyses of outbreaks in China, Italy, Washington State (USA), and the Diamond Princess
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Phylodynamic analysis of a densely sampled COVID19 outbreak in Weifang, China
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Phylodynamic analysis of SARS-CoV-2 | Update 2020-03-06
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Phylodynamic Analyses based on 11 genomes from the Italian outbreak
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[Update] Evolutionary & epidemiological analysis of 128 genomes
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Evolutionary & epidemiological analysis of 93 genomes
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How close are we to the 'phylodynamic threshold'? A simulation study
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Phylodynamic estimation of incidence and prevalence of novel coronavirus (nCoV) infections through time
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Number of mutations along a transmission chain
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Sequencing technology and sequence variation in nCoV-2019
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Temporal signal and the evolutionary rate of 2019 n-CoV using 47 genomes collected by Feb 01 2020
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SARS comparison
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Phylodynamic analysis of nCoV-2019 genomes – 29-Jan-2020
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Phylogenetic analysis of 23 nCoV-2019 genomes, 2020-01-23
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Clock and TMRCA based on 27 genomes
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Further musings on the tMRCA
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Epidemiological Data from the nCoV-2019 Outbreak: Early Descriptions from Publicly Available Data
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