SARS-CoV-2 coronavirus


SARS-CoV-2 Molecular Evolution Genome Reports nCoV-2019 Genomic Epidemiology Software and Tools nCoV-2019 Evolutionary History nCoV-2019 Diagnostics and Vaccines
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Preliminary genomic characterisation of an emergent SARS-CoV-2 lineage in the UK defined by a novel set of spike mutations
nCoV-2019 Genomic Epidemiology
4 342863 December 21, 2020
Novel 2019 coronavirus genome
SARS-CoV-2 coronavirus
27 326662 February 5, 2020
Viral infection and transmission in a large well-traced outbreak caused by the Delta SARS-CoV-2 variant
nCoV-2019 Genomic Epidemiology
0 267936 July 7, 2021
The Proximal Origin of SARS-CoV-2
nCoV-2019 Evolutionary History
4 221403 March 18, 2020
Genomic characterisation of an emergent SARS-CoV-2 lineage in Manaus: preliminary findings
nCoV-2019 Genomic Epidemiology
1 141603 January 25, 2021
Phylodynamic Analysis | 176 genomes | 6 Mar 2020
nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…

17 120591 April 2, 2020
Response to “On the origin and continuing evolution of SARS-CoV-2”
nCoV-2019 Genomic Epidemiology
11 111344 March 16, 2020
First cases of coronavirus disease (COVID-19) in Brazil, South America (2 genomes, 3rd March 2020)
Genome Reports
1 85178 February 29, 2020
Tackling Rumors of a Suspicious Origin of nCoV2019
nCoV-2019 Evolutionary History
29 77829 April 1, 2022
nCoV's relationship to bat coronaviruses & recombination signals (no snakes) - no evidence the 2019-nCoV lineage is recombinant
nCoV-2019 Evolutionary History
23 76836 February 25, 2020
Spike E484K mutation in the first SARS-CoV-2 reinfection case confirmed in Brazil, 2020
nCoV-2019 Genomic Epidemiology
0 65360 January 10, 2021
Clock and TMRCA based on 27 genomes
nCoV-2019 Genomic Epidemiology
5 54387 January 28, 2020
Mutations arising in SARS-CoV-2 spike on sustained human-to-human transmission and human-to-animal passage
SARS-CoV-2 coronavirus
12 51526 February 22, 2022
Preliminary analysis of SARS-CoV-2 importation & establishment of UK transmission lineages
nCoV-2019 Genomic Epidemiology
6 51233 June 26, 2020
nCoV-2019 Spike Protein Receptor Binding Domain Shares High Amino Acid Identity With a Coronavirus Recovered from a Pangolin Viral Metagenomic Dataset
nCoV-2019 Evolutionary History
22 50556 February 27, 2020
SARS-CoV-2 reinfection by the new Variant of Concern (VOC) P.1 in Amazonas, Brazil
nCoV-2019 Genomic Epidemiology
3 50194 January 19, 2021
Preliminary phylogenetic analysis of 11 nCoV2019 genomes, 2020-01-19
nCoV-2019 Genomic Epidemiology
2 49195 January 29, 2020
First African SARS-CoV-2 genome sequence from Nigerian COVID-19 case
Genome Reports
1 47697 March 21, 2020
Issues with SARS-CoV-2 sequencing data
nCoV-2019 Genomic Epidemiology
15 47075 April 5, 2022
Response to nCoV2019 Against Backdrop of Endogenous Retroviruses
nCoV-2019 Evolutionary History
1 42723 February 14, 2020
Whole-Genome Sequence of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) obtained from a South African Coronavirus Disease 2019 (COVID-19) Patient
Genome Reports
0 34995 April 1, 2020
Phylogenetic relationship of SARS-CoV-2 sequences from Amazonas with emerging Brazilian variants harboring mutations E484K and N501Y in the Spike protein
nCoV-2019 Genomic Epidemiology
2 33971 February 27, 2021
Early appearance of two distinct genomic lineages of SARS-CoV-2 in different Wuhan wildlife markets suggests SARS-CoV-2 has a natural origin
SARS-CoV-2 coronavirus
3 30859 June 7, 2021
Lineage-specific growth of SARS-CoV-2 B.1.1.7 during the English national lockdown
nCoV-2019 Genomic Epidemiology
1 28055 December 30, 2020
Novel sublineage within B.1.1.1 currently expanding in Peru and Chile, with a convergent deletion in the ORF1a gene (Δ3675-3677) and a novel deletion in the Spike gene (Δ246-252, G75V, T76I, L452Q, F490S, T859N)
nCoV-2019 Genomic Epidemiology
2 27271 April 25, 2021
Epidemiological Data from the nCoV-2019 Outbreak: Early Descriptions from Publicly Available Data
nCoV-2019 Genomic Epidemiology
2 27106 January 25, 2020
nCoV-2019 codon usage and reservoir (not snakes v2)
nCoV-2019 Evolutionary History
3 25611 January 27, 2020
Preliminary in silico assessment of the specificity of published molecular assays and design of new assays using the available whole genome sequences of 2019-nCoV
nCoV-2019 Diagnostics and Vaccines
52 25555 June 21, 2021
Emergence of Y453F and Δ69-70HV mutations in a lymphoma patient with long-term COVID-19
nCoV-2019 Genomic Epidemiology
4 24840 August 7, 2021
B.1.258∆, a SARS-CoV-2 variant with ∆H69/∆V70 in the Spike protein circulating in the Czech Republic and Slovakia
nCoV-2019 Genomic Epidemiology
1 23458 February 11, 2021