SARS-CoV-2 coronavirus

Topic	Replies	Views	Activity
Preliminary genomic characterisation of an emergent SARS-CoV-2 lineage in the UK defined by a novel set of spike mutations nCoV-2019 Genomic Epidemiology	4	393969	December 21, 2020
Novel 2019 coronavirus genome SARS-CoV-2 coronavirus	27	392121	February 5, 2020
Viral infection and transmission in a large well-traced outbreak caused by the Delta SARS-CoV-2 variant nCoV-2019 Genomic Epidemiology	0	297763	July 7, 2021
The Proximal Origin of SARS-CoV-2 nCoV-2019 Evolutionary History	4	239926	March 18, 2020
Genomic characterisation of an emergent SARS-CoV-2 lineage in Manaus: preliminary findings nCoV-2019 Genomic Epidemiology	1	175305	January 25, 2021
Phylodynamic Analysis \| 176 genomes \| 6 Mar 2020 nCoV-2019 Genomic Epidemiology Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…	17	142089	April 2, 2020
Response to “On the origin and continuing evolution of SARS-CoV-2” nCoV-2019 Genomic Epidemiology	11	121386	March 16, 2020
Tackling Rumors of a Suspicious Origin of nCoV2019 nCoV-2019 Evolutionary History	29	95457	April 1, 2022
First cases of coronavirus disease (COVID-19) in Brazil, South America (2 genomes, 3rd March 2020) Genome Reports	1	93000	February 29, 2020
nCoV's relationship to bat coronaviruses & recombination signals (no snakes) - no evidence the 2019-nCoV lineage is recombinant nCoV-2019 Evolutionary History	23	86955	February 25, 2020
Spike E484K mutation in the first SARS-CoV-2 reinfection case confirmed in Brazil, 2020 nCoV-2019 Genomic Epidemiology	0	72336	January 10, 2021
Clock and TMRCA based on 27 genomes nCoV-2019 Genomic Epidemiology	5	67753	January 28, 2020
Issues with SARS-CoV-2 sequencing data nCoV-2019 Genomic Epidemiology	15	64798	April 5, 2022
SARS-CoV-2 reinfection by the new Variant of Concern (VOC) P.1 in Amazonas, Brazil nCoV-2019 Genomic Epidemiology	3	63053	January 19, 2021
Mutations arising in SARS-CoV-2 spike on sustained human-to-human transmission and human-to-animal passage SARS-CoV-2 coronavirus	12	62202	February 22, 2022
Updated Nextstain SARS-CoV-2 clade naming strategy nCoV-2019 Genomic Epidemiology	0	60432	January 5, 2021
Preliminary analysis of SARS-CoV-2 importation & establishment of UK transmission lineages nCoV-2019 Genomic Epidemiology	6	58968	June 26, 2020
nCoV-2019 Spike Protein Receptor Binding Domain Shares High Amino Acid Identity With a Coronavirus Recovered from a Pangolin Viral Metagenomic Dataset nCoV-2019 Evolutionary History	22	58154	February 27, 2020
Preliminary phylogenetic analysis of 11 nCoV2019 genomes, 2020-01-19 nCoV-2019 Genomic Epidemiology	2	56047	January 29, 2020
First African SARS-CoV-2 genome sequence from Nigerian COVID-19 case Genome Reports	1	54053	March 21, 2020
Response to nCoV2019 Against Backdrop of Endogenous Retroviruses nCoV-2019 Evolutionary History	1	49969	February 14, 2020
Phylogenetic relationship of SARS-CoV-2 sequences from Amazonas with emerging Brazilian variants harboring mutations E484K and N501Y in the Spike protein nCoV-2019 Genomic Epidemiology	2	41705	February 27, 2021
Early appearance of two distinct genomic lineages of SARS-CoV-2 in different Wuhan wildlife markets suggests SARS-CoV-2 has a natural origin SARS-CoV-2 coronavirus	3	41475	June 7, 2021
SARS-CoV-2 evolution, post-Omicron SARS-CoV-2 Molecular Evolution	1	39881	August 30, 2023
Whole-Genome Sequence of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) obtained from a South African Coronavirus Disease 2019 (COVID-19) Patient Genome Reports	0	38595	April 1, 2020
Lineage-specific growth of SARS-CoV-2 B.1.1.7 during the English national lockdown nCoV-2019 Genomic Epidemiology	1	36420	December 30, 2020
Epidemiological Data from the nCoV-2019 Outbreak: Early Descriptions from Publicly Available Data nCoV-2019 Genomic Epidemiology	2	32903	January 25, 2020
Emergence of Y453F and Δ69-70HV mutations in a lymphoma patient with long-term COVID-19 nCoV-2019 Genomic Epidemiology	4	32481	August 7, 2021
Novel sublineage within B.1.1.1 currently expanding in Peru and Chile, with a convergent deletion in the ORF1a gene (Δ3675-3677) and a novel deletion in the Spike gene (Δ246-252, G75V, T76I, L452Q, F490S, T859N) nCoV-2019 Genomic Epidemiology	2	31913	April 25, 2021
nCoV-2019 codon usage and reservoir (not snakes v2) nCoV-2019 Evolutionary History	3	31291	January 27, 2020

Preliminary genomic characterisation of an emergent SARS-CoV-2 lineage in the UK defined by a novel set of spike mutations

nCoV-2019 Genomic Epidemiology

4

393969

December 21, 2020

Novel 2019 coronavirus genome

SARS-CoV-2 coronavirus

27

392121

February 5, 2020

Viral infection and transmission in a large well-traced outbreak caused by the Delta SARS-CoV-2 variant

nCoV-2019 Genomic Epidemiology

0

297763

July 7, 2021

The Proximal Origin of SARS-CoV-2

nCoV-2019 Evolutionary History

4

239926

March 18, 2020

Genomic characterisation of an emergent SARS-CoV-2 lineage in Manaus: preliminary findings

nCoV-2019 Genomic Epidemiology

1

175305

January 25, 2021

Phylodynamic Analysis | 176 genomes | 6 Mar 2020

nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…