Topic Replies Views Activity
Phylodynamic Analysis | 176 genomes | 6 Mar 2020
nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…

18 77335 April 2, 2020
Spike protein D614G variant paper published in Cell today
nCoV-2019 Genomic Epidemiology
3 336 July 3, 2020
Masking strategies for SARS-CoV-2 alignments
Software and Tools
6 1957 July 3, 2020
Genome-sampler: reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity
Software and Tools
1 192 July 1, 2020
Tackling Rumors of a Suspicious Origin of nCoV2019
nCoV-2019 Evolutionary History
20 37745 June 30, 2020
Preliminary in silico assessment of the specificity of published molecular assays and design of new assays using the available whole genome sequences of 2019-nCoV
nCoV-2019 Diagnostics and Vaccines
28 12754 June 26, 2020
Preliminary analysis of SARS-CoV-2 importation & establishment of UK transmission lineages
7 29112 June 26, 2020
Identification of a common deletion in the spike protein of SARS-CoV-2
Novel 2019 coronavirus
16 7908 June 24, 2020
Similarities between SARS-CoV-2 spike protein and lima bean lectin specific for ABO blood group A
1 665 June 20, 2020
Serratus: The ultra-deep search to discover novel coronaviruses
Software and Tools
4 1487 June 17, 2020
Genomic surveillance of SARS-CoV-2 reveals community transmission of a major lineage during the early pandemic phase in Brazil
nCoV-2019 Genomic Epidemiology
1 2107 June 11, 2020
Missed ORFs in nCoV?
nCoV-2019 Evolutionary History
2 3387 June 9, 2020
Sarbecovirus comparative genomics elucidates gene content of SARS-CoV-2 and functional impact of COVID-19 pandemic mutations
Novel 2019 coronavirus
1 433 June 9, 2020
First report of COVID-19 in Scotland
Genome Reports
2 6649 June 9, 2020
Ebola virus disease case in Equateur Province, DRC is a new spillover
Ebolavirus
9 4254 June 8, 2020
Early analysis of 1,093 SARS-CoV2 intra-host variation datasets and comparison with sites under selection
Genome Reports
3 1406 June 8, 2020
Testing SARS-CoV-2 spatial phylogenetic structure
Novel 2019 coronavirus
1 625 June 6, 2020
Introduction and spread of SARS-CoV-2 in the greater Boston area
nCoV-2019 Genomic Epidemiology
1 2431 June 4, 2020
Year-letter Genetic Clade Naming for SARS-CoV-2 on Nextstrain.org
Software and Tools
2 3983 June 2, 2020
Introduction and local transmission of SARS-CoV-2 cases in Kenya
Genome Reports
1 3929 June 2, 2020
SARS-CoV-2 Genomes from Nigeria Reveal Community Transmission, Multiple Virus Lineages and Spike Protein Mutation Associated with Higher Transmission and Pathogenicity
Genome Reports
1 9290 May 29, 2020
Issues with SARS-CoV-2 sequencing data
nCoV-2019 Genomic Epidemiology
10 12377 May 28, 2020
Testing recombination in the pandemic SARS-CoV-2 strains
nCoV-2019 Genomic Epidemiology
1 858 May 28, 2020
Gained stops in data from The Peter Doherty Institute for Infection and Immunity
Genome Reports
10 1394 May 18, 2020
Common Microdeletions in SARS-CoV-2 Sequences
nCoV-2019 Genomic Epidemiology
1 1069 May 15, 2020
Pangolin web application release
Software and Tools
1 2425 May 13, 2020
Selection analysis of GISAID SARS-CoV-2 data
nCoV-2019 Evolutionary History
4 4797 May 5, 2020
Early phylodynamics analysis of the COVID-19 epidemics in France using 194 genomes - April 10, 2020
nCoV-2019 Genomic Epidemiology
4 2786 April 29, 2020
An 81 base-pair deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (Jan-Mar 2020)
Genome Reports
1 3463 April 22, 2020
A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology
Novel 2019 coronavirus
1 9122 April 6, 2020