Virological

Topic	Replies	Views	Activity
Phylodynamic Analysis \| 176 genomes \| 6 Mar 2020 nCoV-2019 Genomic Epidemiology Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…	17	144724	April 2, 2020
Clade Ib Mpox in the Democratic Republic of the Congo (DRC): clinical and virological report of the first case in Kinshasa, the capital city MPXV	2	2303	September 10, 2024
Introducing Pathoplexus Software	0	731	August 27, 2024
Draft genome of the first case of mpox virus detected in Kenya, August 2024 Evolution	0	977	August 22, 2024
Preliminary analysis of full genome sequences of 58 MPXV clade Ib cases from Kamituga and Kamanyola, South-Kivu , DRC Evolution	1	2270	August 9, 2024
Preliminary report on genomic epidemiology of the 2024 H5N1 influenza A virus outbreak in U.S. cattle (Part 2 of 2) H5N1-global	1	9052	August 4, 2024
Emergence of a novel reassortant Oropouche virus drives persistent outbreaks in the Brazilian Amazon region from 2022 to 2024 Other Viruses	1	11717	July 24, 2024
Mpox Clade Ib cases in Goma MPXV	0	3620	March 5, 2024
Mpox virus resurgence in New York City, 2024 Evolution	0	2360	June 11, 2024
Preliminary report on genomic epidemiology of the 2024 H5N1 influenza A virus outbreak in U.S. cattle (Part 1 of 2) H5N1-global	3	17012	May 8, 2024
Note about availability of H5N1 2.3.4.4b consensus sequences from cattle and other species: H5N1-global	1	6426	May 5, 2024
Unbiased metagenomic sequencing reveals Hepatitis A virus as an underestimated cause of undiagnosed febrile illness in Kenya Other Viruses	0	2183	April 11, 2024
Novel Clade I genome sequences from the ongoing mpox virus outbreak of Kamituga in South Kivu province, Democratic Republic of Congo MPXV	2	8536	March 14, 2024
Special Issue of Viruses Journal: Challenges in HIV Diversity	0	2654	March 1, 2024
Ebola virus disease case in Equateur Province, DRC is a new spillover Ebolavirus	9	14323	February 5, 2024
First outbreak of Dengue virus fever in Chad, 2023 Dengue virus	0	2835	December 24, 2023
Preliminary Results from two novel ARTIC-style amplicon based sequencing approaches for RSV A and RSV B RSV	1	10381	December 4, 2023
Chikungunya virus Genomic characterization during an outbreak in Kedougou, Southeastern Senegal, 2023 Chikungunya virus	0	1811	November 15, 2023
Postdoc in Genomic Epidemiology and Bioinformatics of RNA Viruses Jobs and Opportunities	0	2740	August 1, 2023
SARS-CoV-2 evolution, post-Omicron SARS-CoV-2 Molecular Evolution	1	40737	August 30, 2023
NIAID Data Ecosystem Discovery Portal Software	0	2311	August 16, 2023
Update to observations about putative APOBEC3 deaminase editing in the light of new genomes from USA Evolution	0	8824	June 5, 2022
Electron microscopy and a sequence-independent, single-primer amplification (SISPA) viromics approach for monkeypox virus genome determination Genome Reports	0	6520	September 14, 2022
Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance nCoV-2019 Genomic Epidemiology	0	10085	November 7, 2022
Vibrio Cholerae Genomics Other Pathogens	0	3060	June 30, 2023
Clinical Bioinformatician, National Virus Reference Laboratory job with Jobs and Opportunities	0	2395	June 28, 2023
NIH Postdoctoral Fellowship in Virus Evolution and Spillover Jobs and Opportunities	0	2467	June 23, 2023
Towards Pandemic-Scale Ancestral Recombination Graphs of SARS-CoV-2 Software and Tools	0	3485	June 9, 2023
Methods for molecular transmission cluster detection Methods	1	4481	May 30, 2023
An APOBEC3 molecular clock to estimate the date of emergence of hMPXV Evolution	0	12756	August 6, 2022

Phylodynamic Analysis | 176 genomes | 6 Mar 2020

nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…