Virological

Topic	Replies	Views	Activity
Phylodynamic Analysis \| 176 genomes \| 6 Mar 2020 nCoV-2019 Genomic Epidemiology Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…	17	139505	April 2, 2020
Unbiased metagenomic sequencing reveals Hepatitis A virus as an underestimated cause of undiagnosed febrile illness in Kenya	0	432	April 11, 2024
Novel Clade I genome sequences from the ongoing mpox virus outbreak of Kamituga in South Kivu province, Democratic Republic of Congo MPXV	2	4908	March 14, 2024
Special Issue of Viruses Journal: Challenges in HIV Diversity	0	1173	March 1, 2024
Ebola virus disease case in Equateur Province, DRC is a new spillover Ebolavirus	9	12799	February 5, 2024
Emergence of a novel reassortant Oropouche virus drives persistent outbreaks in the Brazilian Amazon region from 2022 to 2024	0	5670	January 26, 2024
First outbreak of Dengue virus fever in Chad, 2023 Dengue virus	0	1606	December 24, 2023
Preliminary Results from two novel ARTIC-style amplicon based sequencing approaches for RSV A and RSV B	1	8572	December 4, 2023
Chikungunya virus Genomic characterization during an outbreak in Kedougou, Southeastern Senegal, 2023 Chikungunya virus	0	1042	November 15, 2023
Postdoc in Genomic Epidemiology and Bioinformatics of RNA Viruses Jobs and Opportunities	0	2042	August 1, 2023
SARS-CoV-2 evolution, post-Omicron SARS-CoV-2 Molecular Evolution	1	38686	August 30, 2023
NIAID Data Ecosystem Discovery Portal Software	0	1704	August 16, 2023
Update to observations about putative APOBEC3 deaminase editing in the light of new genomes from USA Evolution	0	7857	June 5, 2022
Electron microscopy and a sequence-independent, single-primer amplification (SISPA) viromics approach for monkeypox virus genome determination Genome Reports	0	5556	September 14, 2022
Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance nCoV-2019 Genomic Epidemiology	0	9310	November 7, 2022
Vibrio Cholerae Genomics Other Pathogens	0	2155	June 30, 2023
Clinical Bioinformatician, National Virus Reference Laboratory job with Jobs and Opportunities	0	1783	June 28, 2023
NIH Postdoctoral Fellowship in Virus Evolution and Spillover Jobs and Opportunities	0	1827	June 23, 2023
Towards Pandemic-Scale Ancestral Recombination Graphs of SARS-CoV-2 Software and Tools	0	2872	June 9, 2023
Methods for molecular transmission cluster detection Methods	1	3264	May 30, 2023
An APOBEC3 molecular clock to estimate the date of emergence of hMPXV Evolution	0	11886	August 6, 2022
Chikungunya in Paraguay during the first country-wide outbreak: new clade of ECSA genotype harboring structural and non-structural protein mutations Chikungunya virus	0	6664	May 26, 2023
Repeated loss of ORF8 expression in circulating SARS-CoV-2 lineages SARS-CoV-2 coronavirus	0	7514	April 26, 2023
First emergence of Marburg virus in Equatorial Guinea, 2023 Marburg virus	0	8270	March 23, 2023
Wastewater samples CANNOT be used for genome assembly Software and Tools	7	6587	March 3, 2023
Preliminary analysis of selected Sudan Ebola Virus isolates from the 2022 Uganda outbreak Ebolavirus	0	5150	January 24, 2023
The comparative recency of the proximal ancestors of SARS-CoV-1 and SARS-CoV-2 nCoV-2019 Evolutionary History	1	12133	December 22, 2022
Preliminary Genomic Analysis of the RSV Surge 2022 in Massachusetts Reveals a Polyphyletic Epidemic Driven by the Expansion of Multiple Lineages	0	11508	December 9, 2022
September 2022 Sudan Ebola virus disease outbreak in Uganda Ebolavirus	2	9028	December 9, 2022
Issue with pipelines using bcftools to calling consensus in low-coverage regions Software and Tools	1	6403	October 19, 2022

Phylodynamic Analysis | 176 genomes | 6 Mar 2020

nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…