Virological

Topic	Replies	Views	Activity
Phylodynamic Analysis \| 176 genomes \| 6 Mar 2020 nCoV-2019 Genomic Epidemiology Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…	17	140192	April 2, 2020
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Preliminary report on genomic epidemiology of the 2024 H5N1 influenza A virus outbreak in U.S. cattle (Part 2 of 2) H5N1-global	0	4386	May 3, 2024
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Novel Clade I genome sequences from the ongoing mpox virus outbreak of Kamituga in South Kivu province, Democratic Republic of Congo MPXV	2	5464	March 14, 2024
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Emergence of a novel reassortant Oropouche virus drives persistent outbreaks in the Brazilian Amazon region from 2022 to 2024 Other Viruses	0	6322	January 26, 2024
First outbreak of Dengue virus fever in Chad, 2023 Dengue virus	0	1887	December 24, 2023
Preliminary Results from two novel ARTIC-style amplicon based sequencing approaches for RSV A and RSV B RSV	1	8893	December 4, 2023
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SARS-CoV-2 evolution, post-Omicron SARS-CoV-2 Molecular Evolution	1	39005	August 30, 2023
NIAID Data Ecosystem Discovery Portal Software	0	1820	August 16, 2023
Update to observations about putative APOBEC3 deaminase editing in the light of new genomes from USA Evolution	0	7973	June 5, 2022
Electron microscopy and a sequence-independent, single-primer amplification (SISPA) viromics approach for monkeypox virus genome determination Genome Reports	0	5645	September 14, 2022
Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance nCoV-2019 Genomic Epidemiology	0	9422	November 7, 2022
Vibrio Cholerae Genomics Other Pathogens	0	2266	June 30, 2023
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Towards Pandemic-Scale Ancestral Recombination Graphs of SARS-CoV-2 Software and Tools	0	2975	June 9, 2023
Methods for molecular transmission cluster detection Methods	1	3440	May 30, 2023
An APOBEC3 molecular clock to estimate the date of emergence of hMPXV Evolution	0	11975	August 6, 2022
Chikungunya in Paraguay during the first country-wide outbreak: new clade of ECSA genotype harboring structural and non-structural protein mutations Chikungunya virus	0	6993	May 26, 2023
Repeated loss of ORF8 expression in circulating SARS-CoV-2 lineages SARS-CoV-2 coronavirus	0	7649	April 26, 2023
First emergence of Marburg virus in Equatorial Guinea, 2023 Marburg virus	0	8395	March 23, 2023
Wastewater samples CANNOT be used for genome assembly Software and Tools	7	6729	March 3, 2023
Preliminary analysis of selected Sudan Ebola Virus isolates from the 2022 Uganda outbreak Ebolavirus	0	5271	January 24, 2023
The comparative recency of the proximal ancestors of SARS-CoV-1 and SARS-CoV-2 nCoV-2019 Evolutionary History	1	12316	December 22, 2022

Phylodynamic Analysis | 176 genomes | 6 Mar 2020

nCoV-2019 Genomic Epidemiology

Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK [email protected] This is a brief report outlining a simple phylogenetic analysis of publicly shared genome…