I have submitted a paper entitled “A COMMON PALINDROMIC RNA SEQUENCE AS UNITARY BREAKPOINT CONTRIBUTOR TO COPY-CHOICE RECOMBINATION IN SARS-COV-2” and posted a preprint version (subject to revision post-review) on bioRxiv. I will post the doi when available.
Relevant to the breakpoint sequence hypothesis are the number and position of CAGAC and CAGAT on the plus and minus strands of SARS-CoV-2. A map of these is not included in the paper, due to its file size, but a pdf copy is made available here.
NC_045512 breakpoint map.pdf (181.0 KB)
The map not only indicates the location of breakpoint sequences, but also in relation to the RNA code for the known gene products of the virus. Navigation through the 30K genome as challenging, and I hope this helps.
Bill Gallaher