# Methods

**URL:** https://virological.org/c/methods/19.md

[Latest](https://virological.org/latest.md) · [Categories](https://virological.org/categories.md)

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## [About the Methods category](https://virological.org/t/about-the-methods-category/127)

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**Author:** [@arambaut](https://virological.org/u/arambaut)\
**Replies:** 0

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## [Methods for molecular transmission cluster detection](https://virological.org/t/methods-for-molecular-transmission-cluster-detection/934)

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**Author:** [@snadeau](https://virological.org/u/snadeau)\
**Replies:** 1\
**Last updated:** [May 30, 2023, 10:25pm UTC](https://virological.org/t/methods-for-molecular-transmission-cluster-detection/934 "2023-05-30T22:25:45Z")

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Sarah Nadeau Visiting Postdoc, Fred Hutchinson Cancer Research Center sarahnadeau266@gmail.com This is a write-up I put together during a two-month visit to Erick Matsen’s group. Many thanks to Erick and his group for…

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## [Sequence alignment](https://virological.org/t/sequence-alignment/128)

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**Author:** [@cupton](https://virological.org/u/cupton)\
**Replies:** 0\
**Last updated:** [February 22, 2016, 5:50pm UTC](https://virological.org/t/sequence-alignment/128 "2016-02-22T17:50:06Z")

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If you’re looking for a tool to align and edit nucleotide and protein sequences, our Base-By-Base has a variety of extra features that could be useful. Available at: www.virology.ca We’re pretty much at version3 these …